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Recent activity by mehar Sort by recent activity Recent activity Votes
  • CombineGVCF on chrX and chrY hg38 running for ever

    I have been running HaplotypeCaller (HC) on 25 WGS samples on hg38 aligned BAM files. HC was run on the entire genome including autosomes and sex chromosomes in two different ways 1) HC on each chr...

  • GATK4 validateSam Errors interpretation

    1) GATK4 validateSam returns some errors to the validation report:   The BAM for ValidateSam was generated following the GATK post-processing steps in the order: MarkDuplicates, SortSam, BaseRecali...