prasundutta87
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output BAM form ApplyBQSR query using --interval option
Hi,I am dealing with exome germline variant calling. As per https://gatk.broadinstitute.org/hc/en-us/articles/360035531852-Intervals-and-interval-lists, we should always use --intervals (and --inte...
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Truth set download page for BQSR
AnsweredIf you are seeing an error, please provide(REQUIRED) : a) GATK version used: 4.1.9.0b) Exact command used: BaseRecalibrator and ApplyBQSRc) Entire error log: NoneIf not an error, choose a category ...