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CommentsRecent activity by prasundutta87 Sort by recent activity
Thanks a lot for this, Genevieve Brandt (she/her)! It was really helpful.
Hi,I think this is what happened. After visualising a very small exonic portion from hg38, I observed that ApplyBQSR removed reads outside the exonic region. Please see the attached picture. Howeve...
Hi Bhanu, Thanks for your reply. Sorry, I was'nt clear with my question. I was going through some old documents on how to confirm if BQSR has worked well. In most of the documents, a second recalib...
Hi, There was a -bqsr option in old version of BaseRecalibrator. In order to produce a second recalibration table, you could give the first recalibration table to it along with the original BAM fil...