vivekruhela
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Activity overview
Latest activity by vivekruhela-
vivekruhela commented,
Dear GATK Team, I am using mutect2 for somatic mutation identification from MMRF data which contains multiple myeloma (MM) samples from 5 different ethnicities. I have the only tumor, and correspon...
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vivekruhela commented,
Humphrey Gardner I tried it few months before. As far as I remember, I have already created the directory `bam_files` in my home directory and then I was trying to mount it to docker. I am not usin...
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vivekruhela created a post,
No Output from GenomicsDBImport
Dear GATK Team, I am using GATK version 4.1.9.0 for my WES data pipeline. In order to get accurate somatic call, I am trying to generate the Panel of Normal (PON) using GenomicsDBImport module of G...
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vivekruhela commented,
Tiffany Miller: I am also facing the exact same issue. First I was using hg19 from UCSC golden path, the I also tried with the fasta reference files (and .dict file) but still gatting the same erro...
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vivekruhela commented,
Hi, Thanks for this tutorial. I have successfully pulled the gatk docker image as described above but when I tried this command docker run -v ~/my_project:/gatk/my_data -it broadinstitute/gatk:4...