
linouhao
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EXON19 FS EGFR variant
Dear professor,Thanks a lot.I met a variant called by vardict in EGFR EXON19. chr7 55242462 . CAAGGAATT C . clustered_events AS_FilterStatus=SITE;AS_SB_TABLE=584,592|68,88;DP=1...
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werid EGFR variant report
AnsweredDear professor,Thanks a lot. use vardict:These days I found three Close in position variants in EGFR, but these seems to only have 1 in igv, and the support reads and vaf has a big gap. can you hel...
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CalculateContamination differs much in single and paired mode
AnsweredIf you are seeing an error, please provide(REQUIRED) : a)The Genome Analysis Toolkit (GATK) v4.2.4: # without pair $gatk CalculateContamination -I $result_dir/$sample.getpileupsummaries.table -t...
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af-only-gnomad.raw.sites.b37.vcf.gz" appears to contain no sequence dictionary. Attempting to retrieve a sequence dictionary from the associated index file
Answeredthanks a lot If you are seeing an error, please provide(REQUIRED) : a) The Genome Analysis Toolkit (GATK) v4.2.4.1b) $gatk Mutect2 -R $ref_fasta -L $result_dir/$sample.bed -I $result_dir/$sample.te...