linouhao
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Latest activity by linouhao-
linouhao commented,
thanks a lot sorry, I forgot to revise vardict as gatk, because I used both callers, they all found that
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linouhao created a post,
EXON19 FS EGFR variant
Dear professor,Thanks a lot.I met a variant called by vardict in EGFR EXON19. chr7 55242462 . CAAGGAATT C . clustered_events AS_FilterStatus=SITE;AS_SB_TABLE=584,592|68,88;DP=1...
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linouhao commented,
thanks a lotGenevieve Brandt (she/her) I alsohave read that, but still can not get the reason
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linouhao commented,
thanks a lotGenevieve Brandt (she/her) yeah, it maybe a method. but it is clear in igv, I want to know why gatk ignore it, it is a hot point, would you like to have a look at bam file, I can send ...
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linouhao commented,
Thanks a lot Genevieve Brandt (she/her) In the first question, I have talked about the result. use gatk : only get one variant chr7 55242478 . G C . PASS AS_FilterStatus=SITE...
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linouhao commented,
thanks a lotGenevieve Brandt (she/her) any response about this?
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linouhao commented,
thanks a lotGenevieve Brandt (she/her) hope you will have a look when free
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linouhao commented,
sorry for thatGenevieve Brandt (she/her) is there a link of that and can you have alook at my question
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linouhao commented,
this is a very important variant related to EGFR drug. So I am concerned about it. thanks a lot
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linouhao created a post,
werid EGFR variant report
AnsweredDear professor,Thanks a lot. use vardict:These days I found three Close in position variants in EGFR, but these seems to only have 1 in igv, and the support reads and vaf has a big gap. can you hel...