smk_84
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Minimum median mapping quality output query
REQUIRED for all errors and issues: a) GATK version used: 4.2.3.0b) Exact command used: ```FilterMutectCalls --output mutect.filtered.vcf.gz --variant mutect.vcf.gz --reference /storage1/fs1/bga/Ac...
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Hi Can you please point me to the chain file for human_g1k_v37_decoy to hg19 conversion
AnsweredHi, I need to liftover coordinates from human_g1k_v37_decoy to hg19. I can't seem to find the chain file for the same in the gatk resource bundle. Can you please point me to it if it is available s...