that girl
hope all of us know genome better and have a better life
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strand bias and orientation bias
I think many people are confused about strand bias and orientation bias, especially when after reading the mutect.pdf in github docs. here is some description in it The strand artifact filter d...
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how to see 2 or more variants are in the same read
VarDict represents complex variant composites as a single variant, rather than as multiple individual variants. Whenever an InDel is detected in a read, VarDict will recursively scan for another In...
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gatk4 need indel realignment function and complex variants function
will gatk team plan to do this? thanks a lot
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can gatk4 add indel realignment function and complex variants
AnsweredCan you please provide a) GATK 4.1.8.0 in this post, you confirm the value of indel realignment, even haplotypecaller incleding some of that, so why gatk not including it, we want a good command, b...
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has gatk consider Duke regions and CRG36mer
Dear professor, has gatk considered the poorly mappable region in genome. which is Duke regions and CRG36mer. I just read a paper and it refered to this, but I do not know what it is , I also tried...
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sgz used in tumor-only model
will gatk developers think of taking sgz into the tumor-only mode? sgz is a software used in FoundationOne CDx sgz https://github.com/jsunfmi/SGZ