that girl
hope all of us know genome better and have a better life
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here maybe one literal error The C alt allele occurs in the chromosome inherited from parent 2 and the G alt allele occurs in the chromosome from parent 2. (Note that which parent is the mother an...
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here I am asking how to know that in gatk vcf thanks a lot
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when will gatk support calling complex variants, for example variants in EGFR，I do not know after so many versions of updating of gatk, this requirement is still not satisfied
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any response, thanks
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thanks a lot of course sgz method is sound, it has been fda approved. and I think gatk developes should think consider make the soft filtering more readily comprehensible for us common users, most ...
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thanks a lot. I think most people can not hanle the confused math formula easily. so let me put it in another way. in tumor-only mode, if use gnomad database in gatk, will it get the same result a...
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"Allele fraction" refers to the prevalence of an allele in a sample's DNA and is used for CNV segmentation. here sample means what? population database gnomad? or anything else, in fact I only see ...
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germline allele fraction here means gnomad database or others? how the mutect2 works with gnomad database, is it if the variant appears in gnomad and it will tag germline_risk in FILTER column? or ...
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thanks a lot. but sgz take the cnv into account which mutect2 seems not, the sgz not only considered the germline allele fraction