that girl
hope all of us know genome better and have a better life
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Latest activity by that girl-
that girl commented,
here maybe one literal error The C alt allele occurs in the chromosome inherited from parent 2 and the G alt allele occurs in the chromosome from parent 2. (Note that which parent is the mother an...
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that girl created a post,
strand bias and orientation bias
I think many people are confused about strand bias and orientation bias, especially when after reading the mutect.pdf in github docs. here is some description in it The strand artifact filter d...
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that girl commented,
here I am asking how to know that in gatk vcf thanks a lot
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that girl created a post,
how to see 2 or more variants are in the same read
VarDict represents complex variant composites as a single variant, rather than as multiple individual variants. Whenever an InDel is detected in a read, VarDict will recursively scan for another In...
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that girl created a post,
gatk4 need indel realignment function and complex variants function
will gatk team plan to do this? thanks a lot
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that girl created a post,
can gatk4 add indel realignment function and complex variants
AnsweredCan you please provide a) GATK 4.1.8.0 in this post, you confirm the value of indel realignment, even haplotypecaller incleding some of that, so why gatk not including it, we want a good command, b...
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that girl commented,
when will gatk support calling complex variants, for example variants in EGFR，I do not know after so many versions of updating of gatk, this requirement is still not satisfied
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that girl commented,
any response, thanks
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that girl created a post,
has gatk consider Duke regions and CRG36mer
Dear professor, has gatk considered the poorly mappable region in genome. which is Duke regions and CRG36mer. I just read a paper and it refered to this, but I do not know what it is , I also tried...
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that girl commented,
thanks a lot of course sgz method is sound, it has been fda approved. and I think gatk developes should think consider make the soft filtering more readily comprehensible for us common users, most ...