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Monete Rajão Gomes

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Latest activity by Monete Rajão Gomes
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    Monete Rajão Gomes commented,

    Hi all, *Hope everyone is okay* I need some help here, with VQSR command recomendations. I've read this documentation and soon we will try to run VQSR steps (on latest GATK version). I'm using GATK...

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    Monete Rajão Gomes commented,

    Hi Devendra Waikul Unfortunately, I've never used genomicsDBImport before. I've been using combinegvcf, instead. Maybe you should look for this error in other sites or in read-only GATK v3 previous...

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    Monete Rajão Gomes commented,

    Hi Devendra,   I think when you use -ERC GVCF option, your output should be "output_haplotype.g.vcf" or (better) "output_haplotype.g.vcf.gz" Like described above on session: Single-sample GVCF call...

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    Monete Rajão Gomes commented,

    Hi, I have some doubts and I hope anyone could help me. I'm trying to run gatk pipeline again (I did before successfully), and I decided to use as known site, dbSNP last release (v153). So, I've do...