WVNicholson
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Recent activity by WVNicholson Sort by recent activity-
Question about using CNNScoreVariants, etc with targeted sequencing data
I'm interested in using CNNScoreVariants, etc with some targeted sequencing data (human data on 63 genes from about 400 samples) since the documentation says VQSR is not suitable for this and sugge...
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Getting CNNScoreVariants to run faster
I was wondering if anything can be done to get CNNScoreVariants to run faster. There doesn't seem to be a Spark version of it yet. The documentation mentions the arguments "--inter-op-threads" an...
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Recent research papers on current GATK
I was wondering if there are any recent research papers on current GATK, ideally peer-reviewed (but not necessarily) and from the team at the Broad Institute? I realise this is supposed to be cove...
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BQSR small gene panel issue and also changes in newer versions of GATK
These are broadly two different questions; so maybe they belong in separate posts; but it is easier to post them together here since they are both related to my current attempts to use BQSR. I am u...