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PostsVotes on activity by jejacobs23 Sort by votes
Good afternoon, I am working with GATK 22.214.171.124 and am attempting to use the CollectAllelicCounts function as part of a somatic CNV Workflow. I need some additional help with the interval list that...
Issues with Java heap space in CollectAllelicCounts
I am using the Copy Number Variation (CNV) tutorial in order to analyze whole genome sequencing samples (along with matched normal controls). When I run the GATK tool, CollectAllelicCounts, I get ...
Issue with output from CollectAllelicCounts
Hello, I'm using the took CollectAllelicCounts with GATK version 126.96.36.199 and I'm having difficulty with the output file. My code is as follows: REF=<path_to_directory>"/Homo_sapiens_assembly38.fas...
Where did the GATK3 documentation go?
With the update in the website, I can no longer find the documentation for GATK3. Did that move to a different location?