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Geraldine Van der Auwera

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Recent activity by Geraldine Van der Auwera Sort by recent activity Recent activity Votes
  • DRAGEN-GATK Update: Let's get more specific

    This post was written in collaboration with Severine Catreux (Illumina DRAGEN team), James Emery (Broad Institute GATK team) and members of the GATK support team. Last September we announced a new ...

  • Genomics in the Cloud: Origins

    In my last blog post, I introduced the book that Brian O'Connor and I recently co-authored, Genomics in the Cloud, published by O'Reilly Media. Today I'd like to give you a more personal perspectiv...

  • Introducing Genomics in the Cloud, ie "The GATK book"

    I always wince a bit at the phrase "we are thrilled to announce bla bla blah" because it's such a hackneyed sentence starter. Nevertheless, I do have something to announce, and I am in fact quite t...

  • Detecting sample swaps with Picard tools

    By Yossi Farjoun, Associate Director of computational research methods in the Data Sciences Platform **A note to explain the context of the paper by Nauman Javed, Y.T. and others, “Detecting sample...

  • Welcome to the new home of GATK

    Happy New Year, everyone! What better time to roll out something new than the start of a new decade?  Pedants be advised: I don't want to hear it. We're zero-indexing this one. If you’ve been follo...

  • Catching up with the times: GATK is moving to a new web home

    A brief history When GATK was first released around 2010, its documentation lived in a rather primitive wiki that was half-public, half-private, and almost entirely aimed at developers. The wiki wa...