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Geraldine Van der Auwera

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Recent activity by Geraldine Van der Auwera Sort by recent activity Recent activity Votes
  • Full release of open-source DRAGEN-GATK 1.0

    It's finally here! We've been talking about it (on the old, now archived blog!), and talking about it (with a misguidedly optimistic timeline), and talking about it (with actual technical details)…...

  • New Year update — GATK takes on 2021

    Well folks, this new year is off to a heck of a start. I don't know who needs to hear this but it's okay to be struggling. On our end, we're going to do whatever we can to support your work, so don...

  • DRAGEN-GATK update: Upcoming webinar and pipeline release timeframe

    A year ago this month, we announced the start of our collaboration with the DRAGEN team at Illumina, which aims to combine the respective strengths of GATK and DRAGEN as well as promote the standar...

  • DRAGEN-GATK Update: Let's get more specific

    This post was written in collaboration with Severine Catreux (Illumina DRAGEN team), James Emery (Broad Institute GATK team) and members of the GATK support team. Last September we announced a new ...

  • Genomics in the Cloud: Origins

    In my last blog post, I introduced the book that Brian O'Connor and I recently co-authored, Genomics in the Cloud, published by O'Reilly Media. Today I'd like to give you a more personal perspectiv...

  • Introducing Genomics in the Cloud, ie "The GATK book"

    I always wince a bit at the phrase "we are thrilled to announce bla bla blah" because it's such a hackneyed sentence starter. Nevertheless, I do have something to announce, and I am in fact quite t...

  • Welcome to the new home of GATK

    Happy New Year, everyone! What better time to roll out something new than the start of a new decade?  Pedants be advised: I don't want to hear it. We're zero-indexing this one. If you’ve been follo...

  • Catching up with the times: GATK is moving to a new web home

    A brief history When GATK was first released around 2010, its documentation lived in a rather primitive wiki that was half-public, half-private, and almost entirely aimed at developers. The wiki wa...