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Geraldine Van der Auwera

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Latest activity by Geraldine Van der Auwera
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    Geraldine Van der Auwera commented,

    FYI our colleagues in the Genomics Platform (who do the sequencing at the Broad Institute) are presenting a poster at the AGBT meeting this week about their testing of the DRAGEN-GATK pipeline. For...

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    Geraldine Van der Auwera commented,

    MICHAEL MCMANUS Mutect2 and the somatic short variants pipeline are on the list of use cases we want to work on together, but we haven't yet decided which will be next after the germline short vari...

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    Geraldine Van der Auwera commented,

    Hi Kurt, this applies to both the single sample case and the multisample (joint calling) cases. Here we show the evaluation results from the single sample case because they're more straightforward ...

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    Geraldine Van der Auwera created an article,

    DRAGEN-GATK Update: Let's get more specific

    This post was written in collaboration with Severine Catreux (Illumina DRAGEN team), James Emery (Broad Institute GATK team) and members of the GATK support team. Last September we announced a new ...

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    Geraldine Van der Auwera commented,

    Hi David Murphy, sorry I missed your reply. I believe the team is collecting reports etc in the "Other" section of the forum here: https://gatk.broadinstitute.org/hc/en-us/community/topics/36000148...

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    Geraldine Van der Auwera commented,

    Thanks ajwils, we'll do our best not to let you all down.  I asked about the editor, unfortunately that's a limitation of Zendesk. Apparently there's an upgrade coming so we'll see what that provid...

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    Geraldine Van der Auwera commented,

    David Murphy: I just fixed the issue with the redirects on URLs containing "guide" that you reported. Let me know if you come across any other broken links. Thank you for reporting this, it's likel...

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    Geraldine Van der Auwera commented,

    Ah I see what you mean, thanks for clarifying. To be frank, we considered doing that but decided to take a different approach in order to boost the sustainability of our knowledge base. Part of why...

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    Geraldine Van der Auwera commented,

    Ajwils, to clarify, are you saying it’s the discussion threads specifically that you’d like us to preserve for the new feature announcements? For things like that I think we’d like to try to summar...

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    Geraldine Van der Auwera commented,

    Hi David, thanks for reporting this — what you describe is definitely not intentional. It looks like one of the problems you encountered is caused by an inadequate redirect instruction on links tha...