
Bhanu Gandham
Computational Scientist
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Recent activity by Bhanu Gandham Sort by recent activity-
Hi , The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlo...
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Thank you for informing us Andrea! We will fix this soon!
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Hi, Can you please post the header of your input vcf and and few variant records from it.
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Hi Jennifer Irving-McGrath It is possible that your g.vcfs have missing index files. Can you please check for that. Tip: When ever you get a "Failed to create reader" error, you should test your g....
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Hi , The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlo...
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Hi, The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlog...
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Hi efratushava It means that if there is a bam indexed file(.bai file), it will run faster. You don't need to input an index file, the index file just needs to be in the same location as the bam file.
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Official comment Hi , The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlo...
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Hi timh Please post the exact command used and the entire error log.
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Official comment This is happening because you wrote the threshold values as integers but some of the annotations can have decimals, so the evaluation fails. This limitation is documented in the filtering docs. You...