
Bhanu Gandham
Computational Scientist
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Votes on activity by Bhanu Gandham Sort by votes-
Hi , I am going to move your post into our Community Discussions -> General Discussion topic, as the Germline topic is for reporting bugs and issues with the GATK tools. You can read more about o...
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Hi , I am going to move your post into our Community Discussions -> General Discussion topic, as the Germline topic is for reporting bugs and issues with GATK. You can read more about our forum gui...
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Hi Chloé Girard Hi For what you are trying to do use VariantFiltration over SelectVariants. Also there are some other corrections to made in the command you are using: --filter-expression is used...
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Hi , I am going to move your post into our Community Discussions -> General Discussion topic, as the Non-Human topic is for reporting bugs and issues with GATK. You can read more about our forum gu...
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Hi , I am going to move your post into our Community Discussions -> Special GATK Use Cases topic, as the Non-Human topic is for reporting bugs and issues with GATK. You can read more about our foru...
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Hi Rodolfo Adrián Arriaga Rivera This issue has been solved on the forum already. Take a look at this thread: https://gatk.broadinstitute.org/hc/en-us/community/posts/360058358051-HaplotypeCaller...
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Thanks for sharing GE! We will take that under consideration.
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Hi G E We looked into it and we think that CalculateGenotypePosterior is doing what it is supposed to here. In the case where the offspring has het var, there is one mendelian violation. Due to t...
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Hi GE Apologies for the delay, I was on vacation. We are looking into this and will have an update for you soon.
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HI GE I have 2 more questions for you. Please bear with me and I will hopefully have a solution/workaround for you soon. Are all the steps from variant calling, joint calling and CalculateGenotyp...