Bhanu Gandham
Computational Scientist
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Recent activity by Bhanu Gandham Sort by recent activity-
Jyotsana Mehra Take a look at this doc: https://gatk.broadinstitute.org/hc/en-us/articles/360035891131-Errors-about-input-files-having-missing-or-incompatible-contigs
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Linda Do The .alt fine is not the alt reference, it is a BWA index file. For info on what we provide as resources take a look at this doc: https://gatk.broadinstitute.org/hc/en-us/articles/36003589...
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Hi , The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlo...
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Hi , The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlo...
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Hi , The GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlo...
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Hi Matilde You are using a very old version of GATK which we do not support anymore. Please upgrade to the latest version of GATK v 4.1.9.0. The latest version of GATK does not require "-variant_...
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Tatiana Almeida Please search for this error message on google, this issue has been resolved in this forum and others multiple times. Searching for error messages in this forum and google first is ...
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Good to know you were able to solve the issue and thanks for posting the solution!
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Hi Patrícia H. Brito Are you on a shared NFS? How much physical memory do you have on your machine? I suspect that the tool is running out of memory which is why it is behaving this way. Can you a...
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That's good! Good to know that using the reference solves the problem. It is possible that the tool requires some information not available in the bam file and hence providing a reference solves th...