Bhanu Gandham
GATK Forum Lead
- Total activity 1373
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 4
- Subscriptions 751
Activity overview
Latest activity by Bhanu Gandham-
Bhanu Gandham commented,
Hi, Another user had a similar issue, take a look at this thread: https://gatk.broadinstitute.org/hc/en-us/community/posts/360057988172-CreateSomaticPanelOfNormals-fails- In fact this error has...
-
Bhanu Gandham commented,
Manuela Bonetto You see this error when there is an issue with the input vcfs. Please post the content of GATK4teste_cohort.sample_map.txt. Please run ValidateVariants to validate your input vcf(B...
-
Bhanu Gandham commented,
Please post the version of GATK you are using, the exact command and the entire error log.
-
Bhanu Gandham commented,
Kshama Aswath Thank you so much for sharing your GATK experience here. Your interactions and suggestions will help build the knowledge base of this forum and help other scientists with their rese...
-
Bhanu Gandham commented,
Yangyxt The Error suggests reducing the max-gaussians. Have you tried that? If not I would recommend doing that.
-
Bhanu Gandham commented,
masagis This question has been posted on the forum before, please take a look at the suggestion provided there: https://gatk.broadinstitute.org/hc/en-us/community/posts/360072673351-Error-Caused-...
-
Bhanu Gandham commented,
Hi JaeJun Lee First of all we recommend GenomicsDBImport when you have to combine gvcfs in the order of tens or hundreds of samples. For fewer samples as in your case we recommend using CombineGV...
-
Bhanu Gandham commented,
Giulia Corsi Thanks for sharing the data. I have updated the ticket and you can follow the progress of this fix here: https://github.com/broadinstitute/gatk/issues/6776
-
Bhanu Gandham commented,
Hi Giulia Corsi Can you please provide us with the a runnable test case that reproduces the SplitNCigarReads issue? Once we have that, we can debug.
-
Bhanu Gandham commented,
Giulia Corsi We think the issue with SplitNCigarReads is a bug in our code. Thanks for bringing this to our attention. We have created a issue ticket to fix this and you can follow its progress h...