Laura Gauthier
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Who's (Not) Afraid of the Batch Effect Boogeyman?
How do people deal with batch effects? Batch effects encompass all the ways that non-experimental factors sneak their way into affecting your experimental data. Naturally, they’re something we want...
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Joint Calling and the Batch Effect Boogeyman
What happens if you don’t joint call all your samples together? Why do people spend so much time and money reprocessing all the samples they can get their hands on through the same joint calling pi...
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Introducing GATK "Biggest Practices" for Joint Calling Supersized Cohorts
DNA sequencing continues to get cheaper and cheaper as time goes on, which means that we can sequence more samples for the same money. However, as cohorts get larger and larger, running any joint ...