
Josh Gould
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Recent activity by Josh Gould Sort by recent activity-
I believe the error: java.lang.IllegalStateException: Smith-Waterman alignment failure. Cigar = 432M with reference length 432 but expecting reference length of 489 ref is due to a bug in GATK whic...
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Jason, The only change that was made to the workflow was the the M2 task now accepts a billing_project input and the argument ${"--gcs-project-for-requester-pays " + billing_project} was added to a...
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Actually, it would be even better if gatk automatically used the current billing project for requester pays buckets, unless a project was explicitly specified. Thanks.
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It would be nice to set the billing project with an environment variable so that users do not have to modify every command in a task (e.g the M2 task has 5 commands that need to be modified). Thanks.