Kate Herman
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Activity overview
Latest activity by Kate Herman-
Kate Herman created an article,
Mutect2 Webinar [November 17, 2020]
On November 17, 2020, instructors from the Broad Institute taught a 1-hr virtual webinar open to the GATK community. In this webinar, you will learn about how Mutect2 works, and see an example of h...
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Kate Herman created a post,
What's the minimal number of normal samples required to generate the SomaticPanelOfNormals?
This question was asked during the webinar on Nov 17, 2020. It is reposted here for posterity. Q: What's the minimal number of normal samples required to generate the SomaticPanelOfNormals? If I ...
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Kate Herman created a post,
Will there be a DRAGEN-GATK public version made available for mutect2? If yes, any estimated timeline you can share?
This question was asked during the webinar on Nov 17, 2020. It is reposted here for posterity. Q: Will there be a DRAGEN-GATK public version made available for mutect2? If yes, any estimated time...
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Kate Herman commented,
This question was answered during our live webinar. The answer is copied below for posterity. A: Each of the model based filters uses the data you provide to M2 and FilterMutectCalls. As an examp...
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Kate Herman created a post,
Is the seminar being recorded?
This question was asked during the webinar on Nov 17, 2020. It is reposted here for posterity. Q: Is the seminar being recorded? A: Yes, this seminar is being recorded. The recording will be made...
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Kate Herman created an article,
Hosting Requirements for a Workshop
Expenses The host must pay for all expenses incurred by the training crew that falls under these categories: air travel (in economy class for flights durations <4 hours and economy plus/extra legr...
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Kate Herman created an article,
GATK Workshops: Cancellations & Rescheduling
In light of recent developments regarding the ongoing COVID-19 outbreaks, we have been closely monitoring risks around GATK workshops. While science is very important, especially at a time like thi...
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Kate Herman created an article,
GATK Workshop in Gujarat, India | March 2-5, 2020
On March 2-5, 2020, instructors from the Broad Institute taught a 4-day GATK course in Gujarat, India. The goal of this workshop was to teach the tools in GATK used for both Germline and Somatic an...
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Kate Herman created an article,
GATK Workshop in San José, Costa Rica | February 11-14, 2020
On February 11-14, 2020, instructors from the Broad Institute taught a 4-day GATK course at the Universidad de Costa Rica in San José, Costa Rica. The goal of this workshop was to teach the tools i...
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Kate Herman commented,
Hi lemon soft, The installation instructions above were written for use on Linux and Mac operating systems. You should be able to enter the commands as they are in the article. If you have any trou...