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Kavi Jeshram

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Latest activity by Kavi Jeshram
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    Kavi Jeshram commented,

    1. Community
    2. Germline
    3. GATK ApplyBQSR failing

    Ah, it was being run in a docker container so luckily that did not matter but good spotFound the issue though, I previously moved my hg38.dict file but inside there were relative pathsI changed the...

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    Kavi Jeshram created a post,

    GATK ApplyBQSR failing

    1. Community
    2. Germline

    Hi, I am new to bioinformatics and am trying to get a vcf from a FASTQ for my training. I am trying to run base recalibration on my bam file using "Homo_sapiens_assembly38.dbsnp138.vcf" but it seem...

    • Kavi Jeshram
    • 2 followers
    • 2 comments
    • 1 vote