D S
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Activity overview
Latest activity by D S-
D S commented,
Dear Mert Çelik, Out of curiosity, did you use the code in mutect2.wdl to do the filtering of AF information form gnomAD 4.1? grep -v "^#" ${input_vcf} | sed -e 's#\(.*\)\t\(.*\)\t\(.*\)...
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D S commented,
Dear Gökalp Çelik, Thank you so much for your reply and information. I understand the adjusting header issue because the new dbSNP and grch38 use a different header. The af-only file you provided...
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D S commented,
Hi Gökalp Çelik, Thank you so much for your answer! I think even those [preemptible, disks, cpu, memory] commands are not recognized, the system just go with the default settings, which still runs,...
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D S created a post,
Somatic variant calling of WES using Gh38.p14 reference, and mutect_resources.wdl
REQUIRED for all errors and issues: a) GATK version used: 4.6.0.0 b) Exact command used: mutect_resources.wdlc) Entire program log: Hello, I am following the mutect2 pipeline for somatic variant c...