Lily Peck
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Activity overview
Latest activity by Lily Peck-
Lily Peck commented,
Hello Thank you for getting back to me. The problem is not caused by the computing environment, the job is finishing (not terminating unexpectedly) and it only takes ~ 20 mins. Is there a way to r...
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Lily Peck commented,
Update >> I am running this as a while loop, looping through each chromosome / unplaced contig. However I would still like to run it once, on every chromosome and contig in the assembly and bam pro...
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Lily Peck created a post,
GATK HaplotypeCaller: only first chromosome in output vcf
REQUIRED for all errors and issues: a) GATK version used: The Genome Analysis Toolkit (GATK) v4.6.0.0 b) Exact command used: gatk HaplotypeCaller \ -R barcode01_haploid.final.fa \ -I barcode01_ha...