
Beetle
- Total activity 20
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 3
- Subscriptions 6
Activity overview
Latest activity by Beetle-
Beetle commented,
thanks. you were wright. There was some problem with my denoized file. I was able to fix it. thanks.
-
Beetle commented,
Hi Gökalp Çelik, I was able to upload file following instructions from here. https://gatk.broadinstitute.org/hc/en-us/articles/360035889671-How-do-I-submit-a-detailed-bug-report#article-comments...
-
Beetle commented,
Hi Gökalp Çelik Thanks a lot for your reply. I have uploaded all the input files. I think they are in dictionary order. Can you please take a look. Thanks a lot for your help. Download files here: ...
-
Beetle created a post,
PlotModeledSegments: java.lang.IllegalArgumentException: Records were not strictly sorted in dictionary order.
I had split the interval file. and in the last step combined all the split files to run this command. I have checked all my files are sorted according to .dict file. Can someone please help. Also, ...
-
Beetle commented,
Hello Gökalp Çelik, Thanks for reply. I have checked count files, and input lines; everything looks fine to me. So i deleted the previous folder and re-run the same command and it worked this time....
-
Beetle commented,
thanks i was able to install 4.6.1.0. using conda environment.
-
Beetle created a post,
AssertionError: Some samples do not have read depth metadata
I am unable to figure out how to solve for this error. Can anyone please help. Thanks. REQUIRED for all errors and issues:a) GATK version used: The Genome Analysis Toolkit (GATK) v4.6.1.0HTSJDK Ver...
-
Beetle commented,
thanks i was able to install after downgrading python3 version.
-
Beetle commented,
conda install bioconda::gcnvkernel Channels: - conda-forge - biocondaPlatform: linux-64Collecting package metadata (repodata.json): doneSolving environment: \ warning libmamba Added empty dependen...
-
Beetle commented,
Hi Gökalp Çelik thanks for the quick reply. I found this file : https://github.com/broadinstitute/gatk/blob/master/scripts/gatkcondaenv.yml.template Is this the same file you were referring ...