guixu ma
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Latest activity by guixu ma-
guixu ma created a post,
VariantRecalibrator Error about Argument 'resource' was missing
I met the ERROR: Argument resource was missing: Argument 'resource' is required. I have checked the container mounted successfully on my host machine. More details are below.a) GATK version used:4....
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guixu ma commented,
After adding "\",another error occured,"A USER ERROR has occurred: Argument resource was missing: Argument 'resource' is required"
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guixu ma commented,
Hi Gökalp Çelik Could you offer an example that involves the file path？Or could you point out the malformed lines? I have checked and modified it multiple times, but it didn't work out.
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guixu ma created a post,
VariantRecalibrator error:A USER ERROR has occurred: Illegal argument value: Positional arguments were provided ',??{??}' but no positional argument is defined for this tool.
REQUIRED for all errors and issues: a) GATK version used:4.6.0b) Exact command used:gatk VariantRecalibrator \ -R /mnt/sztrios/refernce/Homo_sapiens_assembly38.fasta -V /mnt/sztrios/20240516...