Ryan Welch
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BaseRecalibrator on GATK 4.5 Takes multiple days for a sample
REQUIRED for all errors and issues: a) GATK version used: 4.5b) Exact command used: gatk BaseRecalibrator -I /data/BI_data/nbs/aligned_reads/SRR062634_sorted_dedup_reads.bam -R /data/BI_data/nbs/hg...
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gatk4.5 markduplicatesspark error spark
REQUIRED for all errors and issues: a) GATK version used: 4.5b) Exact command used: atk MarkDuplicatesSpark -I /data/BI_data/nbs/aligned_reads/SRR062634.paired.sam -O /data/BI_data/nbs/aligned_read...