
Hugo DENIS
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Recent activity by Hugo DENIS Sort by recent activity-
Hi, Thank you for your answer. It therefore seems that this tool would not suit our target species. If genotype qualities are well calibrated, I also noticed something odd in our vcf file produce...
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Hi, Thank you again for your help. I created the vcf file using GATK best practice pipeline : 1 HaplotypeCaller > (all reference) 2 GenomicDBimport > Create genomic database (chromosomes only, sp...
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Dear Gökalp, Thank you very much for your help. When specifying -L ${CONTIG} it works perfectly, as long as the working directory is not the same as the one where the GenomicsDBImport folder is ...
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Dear Gökalp, I managed to install docker and gatk docker image and it works perfectly now. Thank you for your help, Best
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Hi, Thank you for your responsiveness. Docker is not installed on the cluster I am working with, I have asked administrators about it. In the meantime I tried to use the last github master branch...
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Hi again, I have tried running the same code and inputs on a different machine and it worked which tends to suggest that the issue is indeed related to dependencies conflicts. I have seen this po...
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Hi, thank you for your answer. I tried your suggestions, changing the destination drive and adding the option, as well as increasing the number of samples, but unfortunately it does not seem to so...