
Faezeh Darbaniyan
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Recent activity by Faezeh Darbaniyan Sort by recent activity-
gatk CombineGVCFs output contains only one Chr
REQUIRED for all errors and issues: a) GATK version used: gatk4/4.4.0.0 b) Exact command used: gatk CombineGVCFs \ -R ${gencode_path}/hg38.fa \ -V ${data_output}/15650_raw_variants.vcf \...
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Why Haplotypecaller gives me empty vcf (only the header) for all of my samples?
REQUIRED for all errors and issues: a) GATK version used: gatk-package-4.5.0.0 b) Exact command used: gatk HaplotypeCaller -R ${gencode_path}/Homo_sapiens_assembly38.fasta \ -I ${aligned...