
RN Sarma
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The usage of gatk GatherVcfs is:gatk GatherVcfsCloud \ -I cohortA_chr1.vcf.gz \ -I cohortA_chr2.vcf.gz \ -O cohortA_chr1chr2.vcf.gz 1. Why is there is GAtherVcfCloud, as my output files...
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My script, as shown below, has produced folders like "genomicsdb_1" to "genomicsdb_11" in the directory "/home/rnsarma/Desktop/Mungbean/Combined_GVCF". How to get one VCF file for all chromosomal...
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Java version: openjdk version "11.0.23" 2024-04-16OpenJDK Runtime Environment (build 11.0.23+9-post-Ubuntu-1ubuntu122.04.1)OpenJDK 64-Bit Server VM (build 11.0.23+9-post-Ubuntu-1ubuntu122.04.1, mix...
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The script ended abruptly with this line at the end " A USER ERROR has occurred: genomicsdb-workspace is not a recognized option ********************************************************************...