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RN Sarma

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  • The usage of gatk GatherVcfs is:gatk GatherVcfsCloud \     -I cohortA_chr1.vcf.gz \     -I cohortA_chr2.vcf.gz \     -O cohortA_chr1chr2.vcf.gz 1. Why is there is GAtherVcfCloud, as my output files...

  • My script, as shown below, has produced folders  like "genomicsdb_1" to "genomicsdb_11" in the directory "/home/rnsarma/Desktop/Mungbean/Combined_GVCF".  How to get one VCF file for all chromosomal...

  • Java version: openjdk version "11.0.23" 2024-04-16OpenJDK Runtime Environment (build 11.0.23+9-post-Ubuntu-1ubuntu122.04.1)OpenJDK 64-Bit Server VM (build 11.0.23+9-post-Ubuntu-1ubuntu122.04.1, mix...

  • The script ended abruptly with this line at the end " A USER ERROR has occurred: genomicsdb-workspace is not a recognized option ********************************************************************...