Ruqaiya Tasneem
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Activity overview
Latest activity by Ruqaiya Tasneem-
Ruqaiya Tasneem commented,
Gökalp Çelik I will work on the suggested pipeline and let you know. Also, does Funcotator annotate bacterial genome? If not, which other annotating tool is compatible with mutect2 vcf format ?
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Ruqaiya Tasneem commented,
SdB I heard the funding got finished so they couldn't continue, even I have the same question. If I can still use it since funcotator in the pipeline does annotations for human genomes rather than ...
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Ruqaiya Tasneem commented,
Hello @Gökalp Çelik Thank you for the suggestion! I have tried this workflow. The main problem i encountered was that i was to apply filter ( i think it was for MQ or something similar ) and the vc...
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Ruqaiya Tasneem created a post,
GATK for microbes
I have read a lot about variant calling using GATK especially Mutect2. But no where, even in the pipeline or even good practise documentation for microbes variant calling have i noticed any sort of...