Benjamin Akande
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Latest activity by Benjamin Akande-
Benjamin Akande commented,
Hi Gökalp Çelik I will re-run the command and get back to you with the outcome. Also, what do you intend by specifying each file's variant parameters? Can you help me navigate that? Best
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Benjamin Akande commented,
Log output 00:35:14.125 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute 00:35:14.232 WARN ReferenceConfidenceVariantContextMerger - Detected invalid annotation...
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Benjamin Akande created a post,
Troubleshooting VCF Output Truncation Issue during GATK CombineGVCFs Process
I'm running gatk-4.1.2.0 where I combine the VCF outputs for my six samples for proceeding steps such as Cigar split, base recalibration, sample naming, etc to generate my genotype VCF outputs. Unf...