Ademola Aina
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Latest activity by Ademola Aina-
Ademola Aina commented,
Perfect! Thank you!
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Ademola Aina created a post,
Hello, gatk wont /can't read my file . Despite double checking and I can see the file directory and even the recal_data.table file created by the first line of command pasted below.
REQUIRED for all errors and issues: a) GATK version used: gatk-4.5.0.0/gatk-package-4.5.0.0-local.jar b) Exact command used:gatk BaseRecalibrator -I ${aligned_reads}/SRR062634_sorted_dedup_reads.ba...
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Ademola Aina commented,
Thanks. I just re-ran the same gatk CreatSequenceDictionary line I had before and it worked just fine.
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Ademola Aina created a post,
Hi, I am new to GATK trying to call variants from WGS and I am getting the below error. What could be the issue
REQUIRED for all errors and issues: a) GATK version used: /gatk-4.5.0.0/gatk-package-4.5.0.0-local.jar b) Exact command used: gatk BaseRecalibrator -I ${aligned_reads}/SRR062634_sorted_dedup_reads...