Tanya Sarkin Jain
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Votes on activity by Tanya Sarkin Jain Sort by votes-
Thank you for the reply I'll have to check the depth, in my above post I was attempting to do the FilterMutectCalls with the pasted commands, however, the number of resulting records in the outputt...
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Thank you, further when I run filter mutect2 I see no changes. I am also running mutect with bqsr corrected, and though it is still running, based off the current numbers I don't expect the order o...
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Thank you, from the documentation, that says: "The known variants are used to mask out bases at sites of real (expected) variation, to avoid counting real variants as errors. Outside of the masked ...
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Im running the recalibration script again, and seemed to be getting further along (not crashing at NC_000008.11:117060763), though still curious what the issue could've been
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[Mon May 13 13:04:56 PDT 2024] Executing as tanyajain@qb3-id286.wynton.ucsf.edu on Linux 4.18.0-513.24.1.el8_9.x86_64 amd64; OpenJDK 64-Bit Server VM 17.0.10+7-LTS; Deflater: Intel; Inflater: Intel...
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Thank you - do you have any recommendations to what to look for when doing the comparison? Best, Tanya