
Steven Strong
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Latest activity by Steven Strong-
Steven Strong commented,
thanks!
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Steven Strong commented,
That fixed it. Thanks so much! It might be useful if this filtering step was also logged like the other filtering steps, to make it easier to debug issues like this.
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Steven Strong created a post,
GetPileupSummaries all outputs zero
When I run GetPileupSummaries with a small example bam, all the output columns are zero, even though I know that the bam contains a read that overlaps the variants. This seems to be the same issue ...
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Steven Strong commented,
Hi Brian- Did you ever resolve this issue? I'm running in to the same problem, and I have verified that there is coverage and that no reads are filtered.