malonzm1
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FastqToSam error when using paired reads
Hi, When I use FastqToSam with paired reads, I get the following exception: `fastq2sam_13.o:picard.PicardException: In paired mode, read name 1 (SRR4785995.1.1) does not match read name 2 (SRR47859...
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Tools for eQTL and somatic mutation analysis of RNA-seq data
Hi, Does anybody have experience performing eQTL analysis and/or somatic mutation analysis of RNA-seq data? What tool/s did you use? Thanks and good day.
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Experience with RNA-Mutect-WMN?
Hi, Does anyone here have experience using RNA-Mutect-WMN https://www.nature.com/articles/s41467-022-30753-2? I'm not sure if the github page https://github.com/yizhak-lab-ccg/RNA_MUTECt_WMN is act...
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Germline or somatic mutation analysis with RNA-seq
Hi, Does this pipeline https://gatk.broadinstitute.org/hc/en-us/articles/360035531192-RNAseq-short-variant-discovery-SNPs-Indels refer to germline or somatic mutations? Thanks and good day.