Daniel Rodden
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Activity overview
Latest activity by Daniel Rodden-
Daniel Rodden commented,
Hi Gokalp, I ran funcotator version 4.5.0.0 with the latest resources and this solved the issue related to the lengths of the coding sequences. Thank you for your help! Best, Dan
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Daniel Rodden created a post,
Funcotator "Problem creating a GencodeFuncotation on transcript. Variant overlaps transcript but is not completely contained within it." & "WARN FuncotatorUtils - createAminoAcidSequence given a coding sequence of length not divisible by 3."
As Funcotator finished successfully are the above errors a problem for further analysis? What steps would you recommend for addressing the Error and Warn messages? Thank you for your help! REQUI...
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Daniel Rodden commented,
Hi, Thanks for your reply. I'm going to try generating the index using tabix and tell you if that works. I'll also try your above suggestions, and report back on what works. Thanks!
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Daniel Rodden created a post,
core dumped when using IndexFeatureFinder to generate index for dbSNP.vcf file
Hi, When trying to generate an index for known-sites file, I consistently have experienced a core dumped error. I figured this was a memory issue so I upped the memory requirements and the number ...