
Thomas Stevens
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Recent activity by Thomas Stevens Sort by recent activity-
Hi David, The reference does have the chr prefix as well. I left Funcotator running for around 5 days and it never progresses. GATK also never aborts it just stays stuck right at the beginning. F...
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Looking into this further, its more confusing. Both my variants and the data stored in funcotator_dataSources.v1.8.hg38.20230908s have the chr notation. Why is it searching for the non chr format?
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Thanks, I unfortunately can't currently use docker with the HPC system. But, I can try to find a solution to that if I can't fix the conda method.
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Hi Gökalp Çelik, Sorry, I feel like I'm missing something obvious but how do I know which of those files I should use. I've found alot of links talking about them but nothing clarifying why you sh...
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Hi Gökalp Çelik, Sorry to ask more questions but I forgot about the baserecalibration step and am stuggling to find examples that state what files should be used for this step as there seems to be ...
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Thank you. I wasn't certain if it was still appropriate to use the public files with this dataset so thanks for clarifying that.