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Salma H. Elaksher

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Latest activity by Salma H. Elaksher
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    Salma H. Elaksher created a post,

    CombineGVCFs

    1. Community
    2. Documentation Questions

    REQUIRED for all errors and issues: a) GATK version used: 4.3.3b) Exact command used: java -jar gatk-4.4.0.0/gatk-package-4.4.0.0-local.jar CombineGVCFs  -R GRCg7b.dna_rm.toplevel.fa  --variant 1-c...

    • Salma H. Elaksher
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    Salma H. Elaksher created a post,

    GenotypeGVCF - missed SNP ID

    1. Community
    2. Documentation Questions

    REQUIRED for all errors and issues: a) GATK version used: GATK 4.4.0b) Exact command used:java -Xmx8G gatk-package-4.4.0.0-local.jar GenotypeGVCFs -R "$Ref" -V $chr.gvcf.gz -O GVCFall.vcf i missed ...

    • Salma H. Elaksher
    • 2 followers
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    Salma H. Elaksher commented,

    1. Community
    2. Documentation Questions
    3. VariantFiltration failed

    So, I can discard these two parameters and continue 

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    • Salma H. Elaksher
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