Anthony Pompetti
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Activity overview
Latest activity by Anthony Pompetti-
Anthony Pompetti created a post,
Funcotator Error. WARN GencodeFuncotationFactory - Cannot create complete funcotation for variant.
I aligned my reads to Ensembl's GRCh38 genome. I realize that there are differences in the contigs names. Funcotator uses contig names with "chr" prefix followed by the chromosome number and Ensemb...
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Anthony Pompetti created a post,
Next Steps: Funcotator - Only IGRs were produced for this dataset.
So I was using Funcotator on vcf files aligned to GRCh38 and I confirmed that the contig names do not contain the prefix chr. What would be the best way to convert these prefixes to chr since I rea...