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Shvartsman

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Latest activity by Shvartsman
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    Shvartsman created a post,

    java.lang.ArrayIndexOutOfBoundsException: index out of bounds for length

    1. Community
    2. New User Advice

    I use the next versions: gatk   4.4.0.0 minimap2   2.26-r1175 samtools   1.19 I have a fastq file. And try to impliment gatk MergeBamAlignment to generate a new bam-file: java -jar gatk.jar Fast...

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    Shvartsman created a post,

    Required arguement in MergeBamAlignment

    1. Community
    2. New User Advice

    I try to impliment 'gatk MergeBamAlignment', it required three arguments in description: output file, reference sequence and unmapped bam file. I enter the next command: ./miniconda3/pkgs/gatk4-4.2...

    • Shvartsman
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