Melissa Spear
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Activity overview
Latest activity by Melissa Spear-
Melissa Spear commented,
Hi Gökalp Çelik Its reassuring to hear that there aren't substantial changes in the outputs. Thank you so much again!
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Melissa Spear commented,
Hi Gökalp Çelik Each individual sample has their VCFs split by chromosome. I looked into some of the samples, and yes it is 1000 genomes that has the split RAW_MQ and DP fields. The other samples ...
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Melissa Spear commented,
Hi @Gökalp Çelik , Thank you, here was the error message as mentioned earlier in the post: "A USER ERROR has occurred: Bad input: Presence of '-RAW_MQ' annotation is detected. This GATK version ex...
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Melissa Spear created a post,
Issue with GenotypegVCFS after Genomics DB import, building vs updating
We built a pipeline for joint calling of WGS samples and were successfully able to run it for chr 13-22. I’ve been having issues with the Genomics DB import and the genotype gvcfs step for chr 12 a...