James Melhorn
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Activity overview
Latest activity by James Melhorn-
James Melhorn created a post,
Bins for dp_hist_all_bin_freq
Please could somebody explain what the bins are for this output histogram. I am presuming this refers to allelic depth. dp_hist_all_bin_freq Unfortunately, I can't seem to find an explana...
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James Melhorn created a post,
rf_tp_probability output field
Could someone provide a little more information on this field please? In particular, how it is derived and how the values might be interpreted. Just eyeballing my results it seems to tally fairly w...
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James Melhorn created a post,
Using uninformative reads (DP) in Mutect2
Dear GATKI am using Mutect2 to call human somatic variants. Coverage is fairly deep (median gt_AD for the reference allele ~1200 reads). I understand DP as total reads at the site and AD as the 'in...
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James Melhorn created a post,
Case v Control variant comparisons
Dear GATK community, I have recently performed targeted (deep) sequencing of ~120 gene exons related to a specific phenotype of asthma. I have an n=120 target patients and a small cohort of age and...