昨日旧梦
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Latest activity by 昨日旧梦-
昨日旧梦 commented,
I have a question about how to remove germline mutations from somatic vcf files caused by Mutect2 tool, is it based on AF information? How to choose the threshold?The command I used is "gatk Mutect...
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昨日旧梦 created a post,
Why is pileups.table empty when running GetPileupSummaries?
REQUIRED for all errors and issues: a) GATK version used:gatk4-4.4.0.0-0 b) Exact command used:gatk GetPileupSummaries -I xx.bam -V somatic_hg38_af-only-gnomad.hg38.vcf.gz -L somatic_hg38_af-only-g...