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Frederik Valeur Seersholm

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Latest activity by Frederik Valeur Seersholm
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    Frederik Valeur Seersholm commented,

    1. Community
    2. Non-Human
    3. GQ=0 upstream of regions with no mapped reads

    Hi Gökalp Çelik, Did you find time to look at this? Thanks!

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    Frederik Valeur Seersholm commented,

    1. Community
    2. Non-Human
    3. GQ=0 upstream of regions with no mapped reads

    Hi Gökalp Çelik, Thanks for your quick reply. It seems to happen across samples (at least in the three I checked). Here's a link to a very small bam and fasta that should replicate the problem: htt...

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    Frederik Valeur Seersholm created a post,

    GQ=0 upstream of regions with no mapped reads

    1. Community
    2. Non-Human

    Hi, I've come across some puzzling results with HaplotypeCaller, and I cannot figure out if this is intended. I've noticed that for roughly 10-12bp upstream of regions with no coverage GQ values ar...

    • Frederik Valeur Seersholm
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