Estel
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Filtermutectcalls doubt with the vcf file
Good morning, I'm using filtermutectcalls after mutect2, and I have some doubts with my ouput file. - What are the exactly mening of the tumor and normal columns, inside the rows I know that there...
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GetPileupSummaries output all 0
I'm running the somatic short variant pipeline and I have all 0s in the output of GetPileupSummaries, I don't understand why this happens, I used this program other times and it worked, I check the...
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Problems with the normal bam file in mutect2 and getpileupsummaries
Good morning, I'm following the tutorial for the somatic variant calling, and it works fine with the only tumor mode but I tried to use mutect2 with a normal bam sample that I extract from ENCODE a...