1. Community
2. Somatic
3. Filtermutectcalls doubt with the vcf file

Hi! I already solved the problem it was a missundersanding, thanks!

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• Estel
• November 07, 2023 11:23
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1. Community
2. Somatic
3. Problems with the normal bam file in mutect2 and getpileupsummaries

Thanks, it worked!  

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• Estel
• October 23, 2023 14:15
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1. Community
2. Somatic
3. Problems with the normal bam file in mutect2 and getpileupsummaries

Hi! thanks for responding,I don't know how to find the SM tag in the bam files. This are how to look the alignment reads of both bam files: normal bam file: D0RRAACXX120419:2:2313:3846:39390       ...

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• Estel
• October 13, 2023 08:01
• 0 votes