Estel
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Activity overview
Latest activity by Estel-
Estel commented,
Hi! I already solved the problem it was a missundersanding, thanks!
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Estel created a post,
Filtermutectcalls doubt with the vcf file
Good morning, I'm using filtermutectcalls after mutect2, and I have some doubts with my ouput file. - What are the exactly mening of the tumor and normal columns, inside the rows I know that there...
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Estel created a post,
GetPileupSummaries output all 0
I'm running the somatic short variant pipeline and I have all 0s in the output of GetPileupSummaries, I don't understand why this happens, I used this program other times and it worked, I check the...
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Estel commented,
Thanks, it worked!
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Estel commented,
Hi! thanks for responding,I don't know how to find the SM tag in the bam files. This are how to look the alignment reads of both bam files: normal bam file: D0RRAACXX120419:2:2313:3846:39390 ...
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Estel created a post,
Problems with the normal bam file in mutect2 and getpileupsummaries
Good morning, I'm following the tutorial for the somatic variant calling, and it works fine with the only tumor mode but I tried to use mutect2 with a normal bam sample that I extract from ENCODE a...