Cora Olpe
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Recent activity by Cora Olpe Sort by recent activity-
ReorderSam: New reference sequence does not contain a matching contig for ERCC-00002
I am running ReorderSam to try and match my bam files to the order of the reference but it looks like they are in the same order, but somehow the reference (Mus_musculus.GRCm38.dna.primary_assembly...
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SplitNCigarReads: Contig ERCC-ERCC-00002 given as location, but this contig isn't present in the Fasta sequence dictionary
Hi, I have scRNAseq data and I am trying to use SplitNCigarReads on the bam files- I didn't do the alignment myself, I received these bam files from the scRNAseq provides. So far, everything has be...
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Struggling to assign read groups with AddOrReplaceReadgroups
Hi, I've spent hours trying to get AddOrReplaceReadgroups to work but I keep getting the same error so I'm hoping to find help here. I am using GATK4 I have a file called plate1_rg_fields.txt whic...